nb_plot_dendro: Plot dendrogram from Netboost output.

In netboost: Network Analysis Supported by Boosting

Description

Plot dendrogram from Netboost output.

Usage

nb_plot_dendro(nb_summary = NULL, labels = FALSE, main = "",
  colorsrandom = FALSE)

Arguments

nb_summary	Netboost results as generated by the nb_summary function.
labels	Boolean flag whether labels should be attached to the leafs.
main	Plot title.
colorsrandom	Boolean flag whether module colors should be shuffeled.

Value

invisible null

Examples

data('tcga_aml_meth_rna_chr18',  package='netboost')
results <- netboost(datan = tcga_aml_meth_rna_chr18, stepno = 20L,
soft_power = 3L, min_cluster_size = 10L, n_pc = 2, scale=TRUE,
ME_diss_thres = 0.25, qc_plot = FALSE)
set.seed(1234) # reproducible but shuffled color-module matching
nb_plot_dendro(nb_summary = results, labels = FALSE, main = 'Test',
colorsrandom = TRUE)

netboost documentation built on Nov. 8, 2020, 4:58 p.m.