maxAdapterContent: Get the maximum Adapter Content
In ngsReports: Load FastqQC reports and other NGS related files

Description Usage Arguments Details Value Examples

Get the maximum Adapter Content across one or more FASTQC reports

1	maxAdapterContent(x, asPercent = TRUE)

`x`	Can be a `.FastqcFile`, `FastqcData`, `FastqcDataList` or path
`asPercent`	`logical`. Format the values as percentages with the added `%` symbol

This will extract the Adapter_Content module from the supplied object, and provide a tibble with the final value for each file.

A tibble object containing the percent of reads with each adapter type at the final position

# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)

# Get the maxAdapterContent
maxAdapterContent(fdl)