npGSEA
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)

Package index
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Vignettes
Functions
128
Source code
13
Man pages
25
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npGSEA: Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)
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API

API for npGSEA
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)

Global functions
.adjustY Source code
.calcBetaHatG Source code
.calcChatGw Source code
.calcChiSqMoments Source code
.calcPvaluesBeta Source code
.calcPvaluesNorm Source code
.calcThatGw Source code
.calcVarThatGw Source code
.center Source code
.checkxg Source code
.getA Source code
.getB Source code
.getResids Source code
.locGenes Source code
.prepW Source code
.prepXYZ Source code
DF Man page
DF,npGSEAResultChiSq-method Man page
DF,npGSEAResultChiSqCollection-method Man page
DF-methods Man page
alphaValue Man page
alphaValue,npGSEAResultBeta-method Man page
alphaValue,npGSEAResultBetaCollection-method Man page
alphaValue-methods Man page
betaHats Man page
betaHats,npGSEAResultBeta-method Man page
betaHats,npGSEAResultBetaCollection-method Man page
betaHats,npGSEAResultChiSq-method Man page
betaHats,npGSEAResultChiSqCollection-method Man page
betaHats,npGSEAResultNorm-method Man page
betaHats,npGSEAResultNormCollection-method Man page
betaHats-methods Man page
betaStat Man page
betaStat,npGSEAResultBeta-method Man page
betaStat,npGSEAResultBetaCollection-method Man page
betaStat-methods Man page
betaValue Man page
betaValue,npGSEAResultBeta-method Man page
betaValue,npGSEAResultBetaCollection-method Man page
betaValue-methods Man page
chiSqStat Man page
chiSqStat,npGSEAResultChiSq-method Man page
chiSqStat,npGSEAResultChiSqCollection-method Man page
chiSqStat-methods Man page
geneSetName Man page
geneSetName,npGSEAResultBeta-method Man page
geneSetName,npGSEAResultBetaCollection-method Man page
geneSetName,npGSEAResultChiSq-method Man page
geneSetName,npGSEAResultChiSqCollection-method Man page
geneSetName,npGSEAResultNorm-method Man page
geneSetName,npGSEAResultNormCollection-method Man page
geneSetName-methods Man page
getIncidence Man page Source code
npGSEA Man page Source code
npGSEAPlot Man page
npGSEAPlot,npGSEAResultBeta-method Man page
npGSEAPlot,npGSEAResultChiSq-method Man page
npGSEAPlot,npGSEAResultNorm-method Man page
npGSEAPlot-methods Man page
npGSEAResultBeta-class Man page
npGSEAResultBetaCollection-class Man page
npGSEAResultChiSq-class Man page
npGSEAResultChiSqCollection-class Man page
npGSEAResultNorm-class Man page
npGSEAResultNormCollection-class Man page
pLeft Man page
pLeft,npGSEAResultBeta-method Man page
pLeft,npGSEAResultBetaCollection-method Man page
pLeft,npGSEAResultNorm-method Man page
pLeft,npGSEAResultNormCollection-method Man page
pLeft-methods Man page
pRight Man page
pRight,npGSEAResultBeta-method Man page
pRight,npGSEAResultBetaCollection-method Man page
pRight,npGSEAResultNorm-method Man page
pRight,npGSEAResultNormCollection-method Man page
pRight-methods Man page
pTwoSided Man page
pTwoSided,npGSEAResultBeta-method Man page
pTwoSided,npGSEAResultBetaCollection-method Man page
pTwoSided,npGSEAResultChiSq-method Man page
pTwoSided,npGSEAResultChiSqCollection-method Man page
pTwoSided,npGSEAResultNorm-method Man page
pTwoSided,npGSEAResultNormCollection-method Man page
pTwoSided-methods Man page
pValues Man page
pValues,npGSEAResultBeta-method Man page
pValues,npGSEAResultChiSq-method Man page
pValues,npGSEAResultNorm-method Man page
pValues-methods Man page
runBetaApprox Source code
runChisqApprox Source code
runNormApprox Source code
show Man page
show,npGSEAResultBeta-method Man page
show,npGSEAResultChiSq-method Man page
show,npGSEAResultNorm-method Man page
show-methods Man page
sigmaSq Man page
sigmaSq,npGSEAResultBeta-method Man page
sigmaSq,npGSEAResultBetaCollection-method Man page
sigmaSq,npGSEAResultChiSq-method Man page
sigmaSq,npGSEAResultChiSqCollection-method Man page
sigmaSq,npGSEAResultNorm-method Man page
sigmaSq,npGSEAResultNormCollection-method Man page
sigmaSq-methods Man page
stat Man page
stat,npGSEAResultBeta-method Man page
stat,npGSEAResultBetaCollection-method Man page
stat,npGSEAResultChiSq-method Man page
stat,npGSEAResultChiSqCollection-method Man page
stat,npGSEAResultNorm-method Man page
stat,npGSEAResultNormCollection-method Man page
stat-methods Man page
xSet Man page
xSet,npGSEAResultBeta-method Man page
xSet,npGSEAResultBetaCollection-method Man page
xSet,npGSEAResultChiSq-method Man page
xSet,npGSEAResultChiSqCollection-method Man page
xSet,npGSEAResultNorm-method Man page
xSet,npGSEAResultNormCollection-method Man page
xSet-methods Man page
zStat Man page
zStat,npGSEAResultNorm-method Man page
zStat,npGSEAResultNormCollection-method Man page
zStat-methods Man page
npGSEA documentation built on Nov. 8, 2020, 6:49 p.m.

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