npGSEAResultNorm-class: Class '"npGSEAResultNorm"'

Description Objects from the Class Slots Author(s) References See Also Examples

Description

Objects of this class store results from running npGSEA with the Gaussian approximation.

Objects from the Class

Objects can be created by calls of npGSEA.

Slots

geneSetName:

Object of class "character", the name of the geneSet

zStat:

Object of class "numeric" , the test statistic, scaled to a standard normal

ThatGw:

Object of class "numeric", the test statistic for the set

varThatGw:

Object of class "numeric", the variance of ThatGw

pLeft:

Object of class "numeric", the p-value for the left-side hypothesis

pRight:

Object of class "numeric", the p-value for the right-side hypothesis

pTwoSided:

Object of class "numeric", the p-value for the two-sided hypothesis

xSet:

Object of class "matrix", the centered and scaled x data for this set

betaHats:

Object of class "vector", the betaHats for each gene in this set

Author(s)

Jessica L. Larson

References

Jessica L Larson and Art B Owen: Moment based gene set tests. BMC Bioinformatics 2015, 16:132. http://www.biomedcentral.com/1471-2105/16/132

See Also

npGSEAResultChiSq

Examples

1
showClass("npGSEAResultNorm")

npGSEA documentation built on May 31, 2017, 10:56 a.m.

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