npGSEAResultBeta-class: Class '"npGSEAResultBeta"'

Description Objects from the Class Slots Author(s) References See Also Examples

Description

Objects of this class store results from running npGSEA with the beta approximation.

Objects from the Class

Objects can be created by calls of npGSEA.

Slots

geneSetName:

Object of class "character", the name of the geneSet

betaStat:

Object of class "numeric" , the test statistic, scaled to the corresponding beta distribution

ThatGw:

Object of class "numeric", the test statistic for the set

varThatGw:

Object of class "numeric", the variance of ThatGw

alpha:

Object of class "numeric", the alpha value

beta:

Object of class "numeric", the beta value

pLeft:

Object of class "numeric", the p-value for the left-side hypothesis

pRight:

Object of class "numeric", the p-value for the right-side hypothesis

pTwoSided:

Object of class "numeric", the p-value for the two-sided hypothesis

xSet:

Object of class "matrix", the centered and scaled x data for this set

betaHats:

Object of class "vector", the betaHats for each gene in this set

Author(s)

Jessica L. Larson

References

Jessica L Larson and Art B Owen: Moment based gene set tests. BMC Bioinformatics 2015, 16:132. http://www.biomedcentral.com/1471-2105/16/132

See Also

npGSEAResultNorm

Examples

1
showClass("npGSEAResultBeta")


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