Calculates the incidence of a gene set in an experiment
A vector containing the list of possible gene ids in the universe (or experiment).
A GeneSet object containing a set of genes of interest
getIncidence returns an incidence vector of the location of the genes within a gene set in a list of genes in an experiment and vise-versa.
A list of inSet and inExp. inSet is a vector with the same length as universeIDs. Each value of inSet is 1 if the gene is in the set and 0 otherwise. inExp is a vector with the same length as geneIds(set), the number of genes in the set. Each value of inExp is 1 if the gene is in universeIDs and 0 otherwise.
Jessica L. Larson and Art Owen
Jessica L Larson and Art B Owen: Moment based gene set tests. BMC Bioinformatics 2015, 16:132. http://www.biomedcentral.com/1471-2105/16/132