Man pages for npGSEA
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)
| alphaValue-methods | ~~ Methods for Function 'alphaValue' ~~ |
| betaHats-methods | ~~ Methods for Function 'betaHats' ~~ |
| betaStat-methods | ~~ Methods for Function 'betaStat' ~~ |
| betaValue-methods | ~~ Methods for Function 'betaValue' ~~ |
| chiSqStat-methods | ~~ Methods for Function 'chiSqStat' ~~ |
| DF-methods | ~~ Methods for Function 'DF' ~~ |
| geneSetName-methods | ~~ Methods for Function 'geneSetName' ~~ |
| getIncidence | Determines the incidence of a gene set in a list of genes. |
| npGSEA | Calculates an approximation of the permutation GSEA... |
| npGSEAPlot-methods | ~~ Methods for Function 'npGSEAPlot' ~~ |
| npGSEAResultBeta-class | Class '"npGSEAResultBeta"' |
| npGSEAResultBetaCollection-class | Class '"npGSEAResultBetaCollection"' |
| npGSEAResultChiSq-class | Class '"npGSEAResultChiSq"' |
| npGSEAResultChiSqCollection-class | Class '"npGSEAResultChiSqCollection"' |
| npGSEAResultNorm-class | Class '"npGSEAResultNorm"' |
| npGSEAResultNormCollection-class | Class '"npGSEAResultNormCollection"' |
| pLeft-methods | ~~ Methods for Function 'pLeft' ~~ |
| pRight-methods | ~~ Methods for Function 'pRight' ~~ |
| pTwoSided-methods | ~~ Methods for Function 'pTwoSided' ~~ |
| pValues-methods | ~~ Methods for Function 'pValues' ~~ |
| show-methods | ~~ Methods for Function 'show' in Package 'base' ~~ |
| sigmaSq-methods | ~~ Methods for Function 'sigmaSq' ~~ |
| stat-methods | ~~ Methods for Function 'stat' ~~ |
| xSet-methods | ~~ Methods for Function 'xSet' ~~ |
| zStat-methods | ~~ Methods for Function 'zStat' ~~ |
