API for oposSOM
Comprehensive analysis of transciptome data

Global functions
GeneSet.Fisher Source code
GeneSet.GSZ Source code
GeneSet.maxmean Source code
Get.Running.Average Source code
Quantile.Normalization Source code
Smooth.Matrix Source code
biomart.available Source code
col.pix Source code
get.beta.statistic Source code
get.neighbors Source code
heatmap Source code
heatmap.A4 Source code
modules.CSV.sheets Source code
modules.chromosomes Source code
modules.profiles Source code
modules.relations Source code
modules.report.sheets Source code
oposSOM Man page
oposSOM-package Man page
opossom.genesets Man page
opossom.new Man page Source code
opossom.run Man page Source code
opossom.tissues Man page
pipeline.affymetrixQualityCheck Source code
pipeline.calcStatistics Source code
pipeline.cancerHallmarks Source code
pipeline.checkInputParameters Source code
pipeline.chromosomeExpressionReports Source code
pipeline.detectEnsemblDataset Source code
pipeline.detectSpotsIntegral Source code
pipeline.detectSpotsSamples Source code
pipeline.differenceAnalyses Source code
pipeline.entropyProfiles Source code
pipeline.geneLists Source code
pipeline.generateSOM Source code
pipeline.genesetOverviews Source code
pipeline.genesetProfilesAndMaps Source code
pipeline.genesetStatisticIntegral Source code
pipeline.genesetStatisticSamples Source code
pipeline.groupAnalysis Source code
pipeline.groupAssignment Source code
pipeline.groupSpecificGenesets Source code
pipeline.htmlDifferencesSummary Source code
pipeline.htmlGenesetAnalysis Source code
pipeline.htmlGroupSummary Source code
pipeline.htmlModuleSummary Source code
pipeline.htmlSampleSummary Source code
pipeline.htmlSummary Source code
pipeline.moduleCorrelationMap Source code
pipeline.patAssignment Source code
pipeline.prepareAnnotation Source code
pipeline.prepareIndata Source code
pipeline.qualityCheck Source code
pipeline.sampleExpressionPortraits Source code
pipeline.sampleSimilarityAnalysisCor Source code
pipeline.sampleSimilarityAnalysisED Source code
pipeline.sampleSimilarityAnalysisICA Source code
pipeline.sampleSimilarityAnalysisSOM Source code
pipeline.summarySheetsGroups Source code
pipeline.summarySheetsModules Source code
pipeline.summarySheetsPATs Source code
pipeline.summarySheetsSamples Source code
pipeline.supportingMaps Source code
pipeline.topologyProfiles Source code
radarchart Source code
sort.label Source code
util.call Source code
util.cat Source code
util.fatal Source code
util.info Source code
util.log Source code
util.progress Source code
util.progress.terminate Source code
util.warn Source code
oposSOM documentation built on May 2, 2018, 3:49 a.m.