Files in oposSOM

Comprehensive analysis of transciptome data

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/DistanceCalculator.cpp

src/Makevars.win

src/RcppExports.cpp

src/Makevars

src/NeighborhoodMatrix.cpp

src/DeltaMatrix.cpp

data/datalist

data/opossom.tissues.RData

data/opossom.genesets.RData

R/html_group_summary.r R/heatmaps.r R/primary_analysis.r R/difference_analyses.r R/summary_sheets_pats.r R/som.linear.init.r R/sample_similarity_analysis_ICA.r R/summary_sheets_modules.r R/modules_reports.r R/group_specific_genesets.r R/detect_spots_integral.r R/geneset_overviews.r R/html_module_summary.r R/html_sample_summary.r R/geneset_analysis.r R/get_running_average.r R/sample_similarity_analysis_SOM.r R/modules_profiles.r R/affymetrix_quality_check.r R/prepare_annotation.r R/module_correlation_map.r R/quantile_normalization.r R/RcppExports.R R/modules_CSV.r R/geneset_statistic_samples.r R/sample_similarity_analysis_ED.r R/get_statistic.r R/radarchart.r R/entropy_profiles.r R/html_summary.r R/som.training.r R/html_geneset_analysis.r R/modules_relations.r R/opossom.r R/topology_profiles.r R/sample_similarity_analysis_cor.r R/modules_chromosomes.r R/summary_sheets_groups.r R/gene_lists.r R/sample_expression_portraits.r R/chromosome_expression_reports.r R/util.r R/geneset_profiles_and_maps.r R/geneset_statistic_integral.r R/pat_assignment.r R/detect_spots_samples.r R/group_assignment.r R/biomart_available.r R/html_differences_summary.r R/calc_statistics.r R/cancer_hallmarks.r R/supporting_maps.r R/quality_check.r R/detect_ensembl_dataset.r R/check_input_parameters.r R/summary_sheets_samples.r R/group_analyses.r

vignettes/Vignette.Rnw

vignettes/Summary.pdf vignettes/HTML.pdf

vignettes/opossom.bib

vignettes/SizeRecommendation.pdf man/opossom.run.Rd man/opossom.genesets.Rd man/opossom.tissues.Rd man/opossom.new.Rd man/oposSOM-package.Rd

inst/CITATION

inst/doc/Vignette.Rnw

inst/doc/Vignette.pdf inst/doc/Vignette.R

oposSOM documentation built on Nov. 8, 2020, 8:16 p.m.