Execute the oposSOM pipeline.
This function realizes the complete pipeline functionality: single gene expression values are culstered to metagenes using a self-organizing map. Based on these metagenes, visualizations (e.g. expression profiles), downstreaming sample similarity analyses (e.g. hierarchical clustering, ICA) and functional enrichment analyses are performed. The results are given within a separate folder and can be browsed using the summary HTML file.
the opossom environment created with
1 2 3 4 5 6 7