checkFeatureNamesOverlap: Check feature names overlap
In pRoloc: A unifying bioinformatics framework for spatial proteomics

Description Usage Arguments Value Author(s) Examples

Checks the marker and unknown feature overlap of two MSnSet instances.

1 2	checkFeatureNamesOverlap(x, y, fcolx = "markers", fcoly, verbose = TRUE)

`x`	An `MSnSet` instance.
`y`	An `MSnSet` instance.
`fcolx`	The feature variable to separate unknown (`fData(y)$coly == "unknown"`) from the marker features in the `x` object.
`fcoly`	As `fcolx`, for the `y` object. If missing, the value of `fcolx` is used.
`verbose`	If `TRUE` (default), the overlap is printed out on the console.

Invisibly returns a named list of common markers, unique x markers, unique y markers in, common unknowns, unique x unknowns and unique y unknowns.

Laurent Gatto

library("pRolocdata")
data(andy2011)
data(andy2011goCC)
checkFeatureNamesOverlap(andy2011, andy2011goCC)
featureNames(andy2011goCC)[1] <- "ABC"
res <- checkFeatureNamesOverlap(andy2011, andy2011goCC)
res$markersX
res$markersY