filterMinMarkers: Removes class/annotation information from a matrix of...
In pRoloc: A unifying bioinformatics framework for spatial proteomics
Description
Usage
Arguments
Value
Author(s)
See Also
View source: R/goannotations.R
Description
Removes annotation information that contain less that a
certain number/percentage of proteins
Usage
1
2
filterMinMarkers(object, n = 10, p, fcol = "GOAnnotations",
verbose = TRUE)
Arguments
object
An instance of class MSnSet.
n
Minimum number of proteins allowed per column. Default is 10.
p
Minimum percentage of proteins per column.
fcol
The name of the matrix of marker information. Default is
GOAnnotations.
verbose
Number of marker candidates retained after filtering.
Value
An updated MSnSet.
Author(s)
Lisa M Breckels
See Also
addGoAnnotations and example therein.
pRoloc documentation built on Nov. 8, 2020, 6:26 p.m.
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Description Usage Arguments Value Author(s) See Also
View source: R/goannotations.R
Description
Removes annotation information that contain less that a certain number/percentage of proteins
Usage
1 2 | filterMinMarkers(object, n = 10, p, fcol = "GOAnnotations",
verbose = TRUE)
|
Arguments
object |
An instance of class |
n |
Minimum number of proteins allowed per column. Default is 10. |
p |
Minimum percentage of proteins per column. |
fcol |
The name of the matrix of marker information. Default is
|
verbose |
Number of marker candidates retained after filtering. |
Value
An updated MSnSet.
Author(s)
Lisa M Breckels
See Also
addGoAnnotations and example therein.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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