LUAD_subset: Subset of batch-corrected multi-omic TCGA data in lung...

In padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis

Description

List of multi-omic (RNA-seq, copy number alterations, methylation, and miRNA-seq) and phenotypic data in 144 individuals in the TCGA-LUAD data for the 13 genes in the D4-GDI signaling pathway.

Usage

data(LUAD_subset)

Format

A named list of five objects of class data.frame containing a subset of the batch-corrected multi-omic TCGA data from lung adenocarcinoma, corresponding to the 13 genes in the D4 GDI signaling pathway: 'clinical' is of dimension 144 x 55 and contains clinical variables for the 144 individuals. 'rnaseq', 'methyl', 'cna', and 'mirna' are of dimension 13 (genes) or 1 (miRNAs) x 144 (samples), where the row names contain the gene symbol or miRNA name.

Source

TCGA

References

The Cancer Genome Atlas Research Network (2014) Nature 511, 543-550. https://doi.org/10.1038/nature13385.

Rau et al. (2019) bioRxiv, https://doi.org/10.1101/827022.

Examples

data(LUAD_subset)
head(LUAD_subset)

padma documentation built on Nov. 8, 2020, 4:56 p.m.