mirtarbase: Curated miR-target interaction predictions from miRTarBase

In padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis

Description

Data.frame of 10,754 predicted miRNA gene targets from miRTarBase (version 7.0), filtered to include only predictions with the 'Functional MTI' support type.

Usage

data(mirtarbase)

Format

An object of class data.frame with two columns: miRNA, which provides the miRNA identifier (e.g., 'hsa-miR-20a-5p') and Target Gene, which provides the corresponding predicted gene target.

Source

http://mirtarbase.mbc.nctu.edu.tw/php/index.php

References

Chou et al. (2018) Nucleic Acids Research 46, D296-D302. https://doi.org/10.1093/nar/gkx1067.

Examples

data(mirtarbase)
head(mirtarbase)

padma documentation built on Nov. 8, 2020, 4:56 p.m.