pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

Package details

AuthorYotam Drier
Bioconductor views Network
MaintainerAssif Yitzhaky <assif.yitzhaky@weizmann.ac.il>
LicenseArtistic-1.0
Version1.28.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathifier")

Try the pathifier package in your browser

Any scripts or data that you put into this service are public.

pathifier documentation built on Nov. 8, 2020, 10:58 p.m.