pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

AuthorYotam Drier
Date of publicationNone
MaintainerAssif Yitzhaky <assif.yitzhaky@weizmann.ac.il>
LicenseArtistic-1.0
Version1.12.0

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Files in this package

pathifier/DESCRIPTION
pathifier/NAMESPACE
pathifier/R
pathifier/R/pathifier.R
pathifier/build
pathifier/build/vignette.rds
pathifier/data
pathifier/data/KEGG.RData
pathifier/data/Sheffer.RData
pathifier/data/datalist
pathifier/inst
pathifier/inst/CITATION
pathifier/inst/doc
pathifier/inst/doc/Overview.R
pathifier/inst/doc/Overview.Rnw
pathifier/inst/doc/Overview.pdf
pathifier/man
pathifier/man/KEGG.Rd pathifier/man/Sheffer.Rd pathifier/man/pathifier-package.Rd pathifier/man/quantify_pathways_deregulation.Rd
pathifier/vignettes
pathifier/vignettes/Overview.Rnw

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