pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pathifier")
AuthorYotam Drier
Bioconductor views Network
Date of publicationNone
MaintainerAssif Yitzhaky <assif.yitzhaky@weizmann.ac.il>
LicenseArtistic-1.0
Version1.14.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/pathifier.R
build
build/vignette.rds
data
data/KEGG.RData
data/Sheffer.RData
data/datalist
inst
inst/CITATION
inst/doc
inst/doc/Overview.R
inst/doc/Overview.Rnw
inst/doc/Overview.pdf
man
man/KEGG.Rd man/Sheffer.Rd man/pathifier-package.Rd man/quantify_pathways_deregulation.Rd
vignettes
vignettes/Overview.Rnw

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