pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

Package details

AuthorYotam Drier
Bioconductor views Network
MaintainerAssif Yitzhaky <[email protected]>
LicenseArtistic-1.0
Version1.20.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pathifier")

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pathifier documentation built on July 18, 2018, 6 p.m.