Sheffer: Sheffer et al. colorectal dataset
In pathifier: Quantify deregulation of pathways in cancer
Description
Usage
Format
Source
Examples
Description
Partial data from Sheffer et al. paper
Usage
1
Format
datathe expression data
samplessample names
normalswhich of the samples is a normal sample
minstdminimal standart deviation allowed
minexpminimal value of experssion allowed
allgenesthe list of genes (by official gene symbol)
Source
Sheffer et.\ al. Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer.
PNAS, 2009, Vol 106(17) pp: 7131-7136.
Examples
1
Example output
pathifier documentation built on Nov. 8, 2020, 10:58 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source Examples
Description
Partial data from Sheffer et al. paper
Usage
1 |
Format
datathe expression data
samplessample names
normalswhich of the samples is a normal sample
minstdminimal standart deviation allowed
minexpminimal value of experssion allowed
allgenesthe list of genes (by official gene symbol)
Source
Sheffer et.\ al. Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer. PNAS, 2009, Vol 106(17) pp: 7131-7136.
Examples
1 |
Example output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.