Description Usage Arguments Value Examples
View source: R/peakPantheR_plotPeakwidth.R
For a single ROI, plot the peak value and peakwidth (RT, m/z,
...) of detected peaks across multiple samples, by acquisition time or in
input order. If rotateAxis=FALSE
x is run order / plot order, y is the
apexValue
/ widthMin
/ widthMax
, if
rotateAxis=TRUE
x is the measurement values and y the run order.
1 2 3 4 5 6 7 8 9 10 |
apexValue |
(float) vector of apex value |
widthMin |
(float) vector of detected peak minimum peakwidth value or NULL (if NULL no peakwidth) |
widthMax |
(float) vector of detected peak maximum peakwidth value or NULL (uf NULL no peakwidth) |
acquTime |
(POSIXct) vector of sample acquisition time as POSIXct or NULL (if NULL points are plotted in the order values are passed as input with the first on top or left) |
varName |
(str) Name of the variable to plot |
sampleColour |
(str) NULL or vector colour for each sample (same length
as |
rotateAxis |
(bool) if TRUE x and y axis are reversed |
verbose |
(bool) if TRUE message when NA scans are removed |
Grob (ggplot object)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ## Input data
apexVal <- c(1, 2, 3, 4)
minVal <- c(0, 0, 2, 2)
maxVal <- c(2, 4, 4, 5)
acqTime <- as.POSIXct(c('2017-07-13 21:06:14', '2017-07-14 21:06:14',
'2017-07-15 21:06:14', '2017-07-16 21:06:14'))
## Plot 4 sampels with colour
peakPantheR_plotPeakwidth(apexValue=apexVal, widthMin=minVal,widthMax=maxVal,
acquTime=NULL, varName='Test variable 1',
sampleColour=c('blue','red','green','orange'),
rotateAxis=FALSE, verbose=FALSE)
## Plot 4 samples with colour by acquisition time
peakPantheR_plotPeakwidth(apexValue=apexVal, widthMin=minVal,widthMax=maxVal,
acquTime=acqTime, varName='Test variable 2',
sampleColour=c('blue','red','green','orange'),
rotateAxis=FALSE, verbose=FALSE)
## Plot 4 samples with colour, rotate axis
peakPantheR_plotPeakwidth(apexValue=apexVal, widthMin=minVal,widthMax=maxVal,
acquTime=NULL, varName='Test variable 3',
sampleColour=c('blue','red','green','orange'),
rotateAxis=TRUE, verbose=FALSE)
## Plot 4 samples with colour by acquisition time, rotate axis
peakPantheR_plotPeakwidth(apexValue=apexVal, widthMin=minVal,widthMax=maxVal,
acquTime=acqTime, varName='Test variable 4',
sampleColour=c('blue','red','green','orange'),
rotateAxis=FALSE, verbose=FALSE)
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