geneEffects-methods: Getter for the complete list of genes and their effect sizes
In perturbatr: Statistical Analysis of High-Throughput Genetic Perturbation Screens

Description Usage Arguments Value Examples

Returns a tibble containing the list of genes that have been used in the study along with their estimated effect sizes.

geneEffects(obj)

## S4 method for signature 'AbstractAnalysedPerturbationData'
geneEffects(obj)

obj

the object for which you want to extract the underlying gene

returns a list.

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 data(rnaiscreen)
 ft <- hm(rnaiscreen)
 geneEffects(ft)

Attaching package: ‘perturbatr’

The following object is masked from ‘package:stats’:

    filter

Fitting hierarchical model
Warning message:
`as.tibble()` is deprecated as of tibble 2.0.0.
Please use `as_tibble()` instead.
The signature and semantics have changed, see `?as_tibble`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated. 
# A tibble: 717 x 4
      Effect GeneSymbol Control  Qval
       <dbl> <chr>        <int> <dbl>
 1 -0.00298  aak1             0    NA
 2  0.00467  abl1             0    NA
 3  0.00391  abl2             0    NA
 4  0.00563  acvr1            0    NA
 5  0.00454  acvr1b           0    NA
 6  0.00511  acvr1c           0    NA
 7 -0.00262  acvr2            0    NA
 8 -0.00167  acvr2b           0    NA
 9 -0.000578 acvrl1           0    NA
10 -0.000420 adam9            0    NA
# … with 707 more rows