API for pipeComp
pipeComp pipeline benchmarking framework
| Global functions | |
|---|---|
| $,PipelineDefinition-method | Man page |
| .aggElapsed | Source code |
| .aggregateClusterEvaluation | Source code |
| .aggregateDR | Source code |
| .aggregateExcludedCells | Source code |
| .aggregateNorm | Source code |
| .args2name | Source code |
| .checkCombMatrix | Source code |
| .checkInputList | Source code |
| .checkPipArgs | Source code |
| .checkRes | Source code |
| .checkSameSteps | Source code |
| .compileExcludedCells | Source code |
| .defaultColorMapping | Source code |
| .doscale | Source code |
| .dosort | Source code |
| .dsMergeResults | Source code |
| .ds_anno | Source code |
| .getCellFn | Source code |
| .getClustAggFields | Source code |
| .getMM | Source code |
| .getReducedNames | Source code |
| .getTrueLabelsFromNames | Source code |
| .getVE | Source code |
| .homogenizeDEA | Source code |
| .mergeFilterOut | Source code |
| .mycall | Source code |
| .pipError | Source code |
| .prepRes | Source code |
| .removeRedundantErrors | Source code |
| .runPipelineF | Source code |
| .runf | Source code |
| .safescale | Source code |
| .scaledLegend | Source code |
| .silScale | Source code |
| .sortcols | Source code |
| .splitEG | Source code |
| .validatePipelineDef | Source code |
| PipelineDefinition | Man page Source code |
| PipelineDefinition-class | Man page |
| PipelineDefinition-method | Man page |
| PipelineDefinition-methods | Man page |
| [,PipelineDefinition,ANY,ANY,ANY-method | Man page |
| addPipelineStep | Man page Source code |
| aggregatePipelineResults | Man page Source code |
| arguments | Man page |
| arguments,PipelineDefinition-method | Man page |
| as.list,PipelineDefinition-method | Man page |
| buildCombMatrix | Man page Source code |
| checkPipelinePackages | Man page Source code |
| clustMetricsCorr | Man page |
| colCenterScale | Man page Source code |
| ctrlgenes | Man page |
| dea_evalPlot_curve | Man page Source code |
| dea_pipeline | Man page Source code |
| defaultArguments | Man page |
| defaultArguments,PipelineDefinition-method | Man page |
| defaultArguments<- | Man page |
| defaultArguments<-,PipelineDefinition-method | Man page |
| defaultStepAggregation | Man page Source code |
| evalHeatmap | Man page Source code |
| evaluateClustering | Man page Source code |
| evaluateDEA | Man page Source code |
| evaluateDimRed | Man page Source code |
| evaluateNorm | Man page Source code |
| exampleDEAresults | Man page |
| exampleResults | Man page |
| farthestPoint | Man page Source code |
| getDimensionality | Man page Source code |
| getQualitativePalette | Man page Source code |
| length,PipelineDefinition-method | Man page |
| match_evaluate_multiple | Man page Source code |
| mergePipelineResults | Man page Source code |
| mockPipeline | Man page Source code |
| names,PipelineDefinition-method | Man page |
| names<-,PipelineDefinition-method | Man page |
| parsePipNames | Man page Source code |
| pipeComp | Man page |
| pipeComp-package | Man page |
| plotElapsed | Man page Source code |
| readPipelineResults | Man page Source code |
| runPipeline | Man page Source code |
| sceWrap | Source code |
| scrna_describeDatasets | Man page Source code |
| scrna_evalPlot_filtering | Man page Source code |
| scrna_evalPlot_overall | Man page Source code |
| scrna_evalPlot_silh | Man page Source code |
| scrna_pipeline | Man page Source code |
| seWrap | Source code |
| show,PipelineDefinition-method | Man page |
| stableG | Man page |
| stepFn | Man page |
| stepFn,PipelineDefinition-method | Man page |
| stepFn<- | Man page |
| stepFn<-,PipelineDefinition-method | Man page |
