Files in pipeComp

pipeComp pipeline benchmarking framework

README.md R/dea_pipeline.R R/misc.R R/scrna_pipeline.R R/PipelineDefinition.R R/dea_evaluationFunctions.R R/scrna_plot.R R/runPipeline.R R/scrna_evaluationFunctions.R R/evalHeatmap.R R/plotElapsed.R R/aggregation.R R/data.R R/scrna_utils.R vignettes/pipeComp.Rmd vignettes/pipeComp_scRNA.Rmd vignettes/pipeComp_dea.Rmd man/parsePipNames.Rd man/buildCombMatrix.Rd man/evaluateDEA.Rd man/farthestPoint.Rd man/defaultStepAggregation.Rd man/aggregatePipelineResults.Rd man/addPipelineStep.Rd man/evalHeatmap.Rd man/clustMetricsCorr.Rd man/checkPipelinePackages.Rd man/evaluateNorm.Rd man/scrna_describeDatasets.Rd man/PipelineDefinition.Rd man/runPipeline.Rd man/dea_evalPlot_curve.Rd man/match_evaluate_multiple.Rd man/getQualitativePalette.Rd man/evaluateDimRed.Rd man/mockPipeline.Rd man/exampleDEAresults.Rd man/colCenterScale.Rd man/scrna_evalPlot_filtering.Rd man/PipelineDefinition-methods.Rd man/scrna_pipeline.Rd man/stableG.Rd man/exampleResults.Rd man/readPipelineResults.Rd man/scrna_evalPlot_silh.Rd man/plotElapsed.Rd man/mergePipelineResults.Rd man/ctrlgenes.Rd man/dea_pipeline.Rd man/scrna_evalPlot_overall.Rd man/evaluateClustering.Rd man/getDimensionality.Rd man/pipeComp-package.Rd inst/doc/pipeComp_dea.R inst/doc/pipeComp.Rmd inst/doc/pipeComp_scRNA.R inst/doc/pipeComp.R inst/doc/pipeComp_scRNA.Rmd inst/doc/pipeComp_dea.Rmd inst/extdata/impWrappers.R inst/extdata/DoDataImputation.R inst/extdata/MCVR.R inst/extdata/willtownes_scrna2019_utils.R inst/extdata/dea_wrappers.R inst/extdata/scrna_alternatives.R