Man pages for podkat
Position-Dependent Kernel Association Test
| assocTest-methods | Perform Association Test |
| AssocTestResult-class | Class 'AssocTestResult' |
| AssocTestResultRanges-class | Class 'AssocTestResultRanges' |
| computeKernel | Compute Kernel Matrix |
| filterResult-methods | Filter Association Test Results According to p-Values or... |
| GenotypeMatrix-class | Class 'GenotypeMatrix' |
| genotypeMatrix-methods | Constructors for Creating 'GenotypeMatrix' Objects |
| hgA | Artificial Human Chromosome for Testing Purposes |
| NullModel-class | Class 'NullModel' |
| nullModel-methods | Create Null Model for Association Test |
| p.adjust-methods | Adjust p-Value for Multiple Tests |
| partitionRegions-methods | Partition Genomic Regions |
| plot-methods | Plotting functions |
| podkat-package | PODKAT Package |
| print-methods | Print Association Test Results |
| qqplot-methods | Quantile-Quantile Plots |
| readGenotypeMatrix-methods | Read from VCF File |
| readRegionsFromBedFile | Read Genomic Regions from BED File |
| readSampleNamesFromVcfHeader | Read Sample Names from VCF File Header |
| readVariantInfo-methods | Read information about variants from VCF file |
| sort-methods | Sort Association Test Results |
| split-methods | Split 'GRanges' Object |
| unmasked-datasets | Unmasked Regions of Human Genomes |
| unmaskedRegions | Extract Unmasked Regions from 'MaskedBSgenome' Object |
| VariantInfo-class | Class 'VariantInfo' |
| weightFuncs | Weighting Functions |
| weights-methods | Extract Contribution Weights of Variants |
