Man pages for proteoQC
An R package for proteomics data quality control
| addSummaryChart | Add PRIDE summary charts |
| calcMSQCMetrics | Calculate the MS1 and MS2 level QC metrics |
| chargeStat | Charge distribution |
| cntStat | contaminants stat |
| combineRun | Combine multiple results |
| createTargetDecoyDB | Create target-decoy database |
| getEnzyme | Get the enzymes list |
| getMods | Get the modification list |
| labelRatio | Calculate the labeling efficiency of isobaric labeling data |
| loadmsQCres | Load the result of 'msQCpipe' |
| msQCpipe | The main function of msQC pipeline |
| plotBioRepVenn | Venn plot in biological replicate level |
| plotFractionIDResult | Barplot in different level for each fraction |
| plotMS1Error | plot MS1 mass error |
| plotMS2Error | plot MS2 mass error |
| plotMS2Error_obsolete | plot MS2 mass error |
| plotSampleIDResultErrorBar | Error barplot in different level for each fraction |
| plotSampleVenn | Venn plot in sample level |
| plotTechRepVenn | Venn plot in technical replicate level |
| print.msQCres | Print the information of msQCres object |
| proteinGroup | Protein inference |
| reportHTML | HTML format report generator |
| runTandem | Run X!Tandem |
| showEnzyme | Shown all enzymes |
| showMods | Shown all modifications |
