loadAnnotation: Load alternative splicing annotation from 'AnnotationHub'

In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description

Load alternative splicing annotation from AnnotationHub

Usage

loadAnnotation(annotation, cache = NULL)

Arguments

annotation	Character: annotation to load
cache	Character: directory path of cache (if NULL, default location is AnnotationHub::getAnnotationHubOption("CACHE"))

Value

List of data frames containing the alternative splicing annotation per event type

See Also

Other functions for PSI quantification: filterPSI(), getSplicingEventTypes(), listSplicingAnnotations(), plotRowStats(), quantifySplicing()

Examples

human <- listSplicingAnnotations()[[1]]
## Not run: 
annot <- loadAnnotation(human)

## End(Not run)

psichomics documentation built on Nov. 8, 2020, 5:44 p.m.