parseTcgaSampleInfo: Parse sample information from TCGA sample identifiers
In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Description
Usage
Arguments
Value
See Also
Examples
Description
Parse sample information from TCGA sample identifiers
Usage
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parseTCGAsampleTypes(
samples,
filename = system.file("extdata", "TCGAsampleType.RDS", package = "psichomics")
)
parseTCGAsampleInfo(samples, match = NULL)
Arguments
samples
Character: sample identifiers
filename
Character: path to RDS file containing corresponding types
match
Integer: match between samples and subjects (NULL by
default; performs the match)
Value
Metadata associated with each TCGA sample
See Also
Other functions associated with TCGA data retrieval:
getDownloadsFolder(),
getTCGAdataTypes(),
isFirebrowseUp(),
loadTCGAdata()
Examples
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parseTCGAsampleTypes(c("TCGA-01A-Tumour", "TCGA-10B-Normal"))
samples <- c("TCGA-3C-AAAU-01A-11R-A41B-07", "TCGA-3C-AALI-01A-11R-A41B-07",
"TCGA-3C-AALJ-01A-31R-A41B-07", "TCGA-3C-AALK-01A-11R-A41B-07",
"TCGA-4H-AAAK-01A-12R-A41B-07", "TCGA-5L-AAT0-01A-12R-A41B-07")
parseTCGAsampleInfo(samples)
psichomics documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value See Also Examples
Description
Parse sample information from TCGA sample identifiers
Usage
1 2 3 4 5 6 | parseTCGAsampleTypes(
samples,
filename = system.file("extdata", "TCGAsampleType.RDS", package = "psichomics")
)
parseTCGAsampleInfo(samples, match = NULL)
|
Arguments
samples |
Character: sample identifiers |
filename |
Character: path to RDS file containing corresponding types |
match |
Integer: match between samples and subjects ( |
Value
Metadata associated with each TCGA sample
See Also
Other functions associated with TCGA data retrieval:
getDownloadsFolder(),
getTCGAdataTypes(),
isFirebrowseUp(),
loadTCGAdata()
Examples
1 2 3 4 5 6 | parseTCGAsampleTypes(c("TCGA-01A-Tumour", "TCGA-10B-Normal"))
samples <- c("TCGA-3C-AAAU-01A-11R-A41B-07", "TCGA-3C-AALI-01A-11R-A41B-07",
"TCGA-3C-AALJ-01A-31R-A41B-07", "TCGA-3C-AALK-01A-11R-A41B-07",
"TCGA-4H-AAAK-01A-12R-A41B-07", "TCGA-5L-AAT0-01A-12R-A41B-07")
parseTCGAsampleInfo(samples)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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