plotTranscripts: Plot transcripts

In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description

Plot transcripts

Usage

plotTranscripts(
  info,
  eventPosition = NULL,
  event = NULL,
  eventData = NULL,
  shiny = FALSE
)

Arguments

info	Information retrieved from Ensembl
eventPosition	Numeric: coordinates of the alternative splicing event (ignored if event is set)
event	Character: identifier of the alternative splicing event to plot
eventData	Object containing event information to be parsed
shiny	Boolean: is the function running in a Shiny session?

Value

NULL (function is only used to modify the Shiny session's state or internal variables)

See Also

Other functions to retrieve external information: ensemblToUniprot(), plotProtein(), queryEnsemblByGene()

Examples

event <- "SE_12_-_7985318_7984360_7984200_7982602_SLC2A14"
info  <- queryEnsemblByEvent(event, species="human", assembly="hg19")
## Not run: 
plotTranscripts(info, event=event)

## End(Not run)

psichomics documentation built on Nov. 8, 2020, 5:44 p.m.