prepareFirebrowseArchives: Prepares Firebrowse archives in a given directory

In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description

Checks Firebrowse archives' integrity using the MD5 files, extracts the content of the archives, moves the content to newly-created folders and removes the original downloaded archives.

Usage

prepareFirebrowseArchives(archive, md5, folder, outdir)

Arguments

archive	Character: path to downloaded archives
md5	Character: path to MD5 files of each archive
folder	Character: master directory where every archive will be extracted
outdir	Character: subdirectories where to move the extracted content

Value

Invisible TRUE if successful

Examples

file <- paste0(
    "~/Downloads",
    "ACC/20151101/gdac.broadinstitute.org_ACC.",
    "Merge_Clinical.Level_1.2015110100.0.0.tar.gz")
md5 <- paste0(file, ".md5")
## Not run: 
prepareFirebrowseArchives(archive = file, md5 = paste0(file, ".md5"))

## End(Not run)

psichomics documentation built on Nov. 8, 2020, 5:44 p.m.