Man pages for pulsedSilac
Analysis of pulsed-SILAC quantitative proteomics data

addMisscleavedPeptidesAdd miss-cleaved peptide expression levels for old isotope...
barplotCountsNumber of detected features per sample
barplotTimeCoverageNumber of detected features per sample
buildLinkerDfConstructs a linkerDf that can be used as input when...
calculateAICCalculates the Akaike Information Criteria (AIC)
calculateIsotopeFractionCalculates the incorporated isotope fraction
calculateIsotopeRatioRatio calculation
calculateOldIsotopePoolEstimates the fraction of old isotope for each time point
compareAICCalculates the probability of each model from a set of...
filterByMissingTimepointsFilter proteins/peptides by the amount of measurements...
mefPESilacProteomicsExperiment with pulsed silac data from MEFs
mergeMerge
mergeModelsListsMerge several models lists.
modelTurnoverEstimate protein/peptide turnover
mostStableMost stable proteins/peptides
plotDistributionAssayDistribution of assay data per condition and timepoint.
plotDistributionModelDistribution of modelling output
plotIndividualModelFitted model(s) for a feature
recycleLightLysineData frame with miss cleaved peptides quantifications from...
scatterCompareAssaysScatter plot of two conditions for each timepoint of an...
scatterCompareModelsScatter plot of two conditions for a model metric.
SilacPeptideExperiment-classSilacPeptideExperiment class
SilacPeptideExperiment-constructorSilacPeptideExperiment constructor
SilacProteinExperiment-classSilacProteinExperiment class
SilacProteinExperiment-constructorSilacProteinExperiment constructor
SilacProteinPeptideExperiment-accessorsAccessors for the SilacProteinExperiment and...
SilacProteomicsExperiment-accessorsAccessors for the SilacProteomicsExperiment class
SilacProteomicsExperiment-classSilacProteomicsExperiment class
SilacProteomicsExperiment-constructorSilacProteomicsExperiment constructor
upsetTimeCoverageNumber of detected features per sample
wormsPEProteomicsExperiment with pulsed silac data from C. elegans...
pulsedSilac documentation built on Nov. 8, 2020, 5:13 p.m.