mefPE: SilacProteomicsExperiment with pulsed silac data from MEFs
In pulsedSilac: Analysis of pulsed-SILAC quantitative proteomics data
Description
Usage
Format
Details
Description
A pre-built SilacProteinExperiment object with data from a pulsed
silac experiment done in mouse embryonic fibroblasts (MEFs). Two cell
cultures are compared: cultured with or without serum.
Usage
1
Format
A SilacProteinExperiment object with 5223 proteins in a total
of 10 samples.
- colData
A DataFrame with the design of the experiment:
samples, timepoints, replicates...
- assays
A list of matrices with quantification data at protein
level: ratio and fraction.
- rowData
A DataFrame with 3 columns that general protein
id information.
Details
This dataset is used as an example, in the pulsed silac vignette, to show
the effect of comparing protein turnover between cell lines growing at
different rates.
pulsedSilac documentation built on Nov. 8, 2020, 5:13 p.m.
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Description Usage Format Details
Description
A pre-built SilacProteinExperiment object with data from a pulsed
silac experiment done in mouse embryonic fibroblasts (MEFs). Two cell
cultures are compared: cultured with or without serum.
Usage
1 |
Format
A SilacProteinExperiment object with 5223 proteins in a total
of 10 samples.
- colData
A
DataFramewith the design of the experiment: samples, timepoints, replicates...- assays
A list of matrices with quantification data at protein level: ratio and fraction.
- rowData
A
DataFramewith 3 columns that general protein id information.
Details
This dataset is used as an example, in the pulsed silac vignette, to show the effect of comparing protein turnover between cell lines growing at different rates.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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