quantsmooth: Quantile smoothing and genomic visualization of array data

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

AuthorJan Oosting, Paul Eilers, Renee Menezes
Date of publicationNone
MaintainerJan Oosting <j.oosting@lumc.nl>
LicenseGPL-2
Version1.40.0

View on Bioconductor

Files in this package

quantsmooth/DESCRIPTION
quantsmooth/NAMESPACE
quantsmooth/R
quantsmooth/R/quantsmooth.R quantsmooth/R/quantsmoothplot.R
quantsmooth/build
quantsmooth/build/vignette.rds
quantsmooth/data
quantsmooth/data-raw
quantsmooth/data-raw/chrombandsUCSC.R
quantsmooth/data/chr14.rda
quantsmooth/data/chrom.bands.hg18.rda
quantsmooth/data/chrom.bands.hg19.rda
quantsmooth/data/chrom.bands.hg38.rda
quantsmooth/data/chrom.bands.mm10.rda
quantsmooth/data/chrom.bands.rda
quantsmooth/inst
quantsmooth/inst/doc
quantsmooth/inst/doc/quantsmooth.R
quantsmooth/inst/doc/quantsmooth.Rnw
quantsmooth/inst/doc/quantsmooth.pdf
quantsmooth/man
quantsmooth/man/Chromosome14.Rd quantsmooth/man/chrom.bands.Rd quantsmooth/man/drawSimpleChrom.Rd quantsmooth/man/getChangedIdx.Rd quantsmooth/man/getChangedRegions.Rd quantsmooth/man/getLambdaMin.Rd quantsmooth/man/grid.chromosome.Rd quantsmooth/man/lengthChromosome.Rd quantsmooth/man/numericCHR.Rd quantsmooth/man/paintCytobands.Rd quantsmooth/man/plotChromosome.Rd quantsmooth/man/plotSmoothed.Rd quantsmooth/man/position2Cytoband.Rd quantsmooth/man/prepareGenomePlot.Rd quantsmooth/man/quantsmooth.Rd quantsmooth/man/quantsmooth.cv.Rd
quantsmooth/man/quantsmooth.seg.rd
quantsmooth/man/scaleto.Rd
quantsmooth/vignettes
quantsmooth/vignettes/quantsmooth.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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