plotChromosome: Wrapper for plotSmoothed

In quantsmooth: Quantile smoothing and genomic visualization of array data

Description

This function is a wrapper for plotSmoothed, to make data subsetting easier

Usage

plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)

Arguments

gendata	numeric matrix or data.frame
chrompos	chrompos object with same numer of rows as gendata
chromosome	numeric, chromosme to show
dataselection	optional, subset of samples/columns in gendata
ylim	limits for plot
normalized.to	y-value(s) for line
grid	x-value(s) for line
smooth.lambda	smoothing parameter, see quantsmooth
interval	position of extra lines besides median, see plotSmoothed
...	extra arguments for plotSmoothed

Value

The function is used for its side effects

Author(s)

Jan Oosting

See Also

plotSmoothed, quantsmooth

quantsmooth documentation built on Nov. 8, 2020, 8:27 p.m.