plotChromosome: Wrapper for plotSmoothed

Description Usage Arguments Value Author(s) See Also

View source: R/quantsmoothplot.R

Description

This function is a wrapper for plotSmoothed, to make data subsetting easier

Usage

1
plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)

Arguments

gendata

numeric matrix or data.frame

chrompos

chrompos object with same numer of rows as gendata

chromosome

numeric, chromosme to show

dataselection

optional, subset of samples/columns in gendata

ylim

limits for plot

normalized.to

y-value(s) for line

grid

x-value(s) for line

smooth.lambda

smoothing parameter, see quantsmooth

interval

position of extra lines besides median, see plotSmoothed

...

extra arguments for plotSmoothed

Value

The function is used for its side effects

Author(s)

Jan Oosting

See Also

plotSmoothed, quantsmooth


quantsmooth documentation built on Nov. 8, 2020, 8:27 p.m.