chrom.bands: Dataset of human chromosomes and their banding patterns
In quantsmooth: Quantile smoothing and genomic visualization of array data
Description
Usage
Format
Details
Source
References
Description
Dataset used to produce human chromosomal ideograms for plotting purposes.
Usage
1
Format
A data frame with 4068 observations on the following 12 variables.
chra character vector
arma character vector
banda character vector
ISCN.topa numeric vector
ISCN.bota numeric vector
bases.topa numeric vector
bases.bota numeric vector
staina character vector
cM.topa numeric vector
cM.bota numeric vector
n.markersa numeric vector
p.markersa numeric vector
Details
The original file gives only the physical map positions. The genetic map
positions are interpolated from the Rutgers linkage map (Kong et al 2004).
Source
ftp://ftp.ncbi.nlm.nih.gov/genomes/H\_sapiens/maps/mapview/BUILD.35.1/ideogram.gz.
References
Kong X, Murphy K, Raj T, He C, White PS, Matise TC. 2004.
A Combined Linkage-Physical Map of the Human Genome.
American Journal of Human Genetics, 75(6):1143-8.
quantsmooth documentation built on Nov. 8, 2020, 8:27 p.m.
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Description Usage Format Details Source References
Description
Dataset used to produce human chromosomal ideograms for plotting purposes.
Usage
1 |
Format
A data frame with 4068 observations on the following 12 variables.
chra character vector
arma character vector
banda character vector
ISCN.topa numeric vector
ISCN.bota numeric vector
bases.topa numeric vector
bases.bota numeric vector
staina character vector
cM.topa numeric vector
cM.bota numeric vector
n.markersa numeric vector
p.markersa numeric vector
Details
The original file gives only the physical map positions. The genetic map positions are interpolated from the Rutgers linkage map (Kong et al 2004).
Source
ftp://ftp.ncbi.nlm.nih.gov/genomes/H\_sapiens/maps/mapview/BUILD.35.1/ideogram.gz.
References
Kong X, Murphy K, Raj T, He C, White PS, Matise TC. 2004. A Combined Linkage-Physical Map of the Human Genome. American Journal of Human Genetics, 75(6):1143-8.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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