Man pages for qusage
qusage: Quantitative Set Analysis for Gene Expression
| aggregateGeneSet | Calculate Pathway Activation |
| calcBayesCI | Calculate pathway Confidence Intervals |
| calcVIF | Calculate Variance Inflation Factor |
| combinePDFs | Combine PDFs from multiple QuSAGE comparisons |
| eset.full | Example gene expression set |
| fluVaccine | Gene expression sets from Flu Vaccine trials |
| GeneSets | Example Gene Sets |
| getXcoords | Get the X coordinates for the points of the PDF |
| makeComparison | Compare Genes Between Two Groups |
| newQSarray | The qusage Array Object |
| plotCIs | Plot Pathway Mean and Confidence Intervals |
| plotCIsGenes | Plot Gene Mean and Confidence Intervals |
| plotCombinedPDF | Plot combined PDF for an individual pathway |
| plotDensityCurves | Plot gene set PDFs |
| plotGeneSetDistributions | Plot gene and gene set PDFs |
| pVal | Calculate p-values for gene set activity |
| qgen | Run qusage while incoprating generalized least squares and... |
| QSarray-class | Class '"QSarray"' |
| qsTable | Summary of QSarray Results |
| qusage | Run qusage on an expression dataset |
| read.gmt | Read in gene set information from .gmt files |
