GeneSets: Example Gene Sets

Description Usage Source References

Description

ISG.geneSet

A vector contains a list of probable ISGs based on Schoggins et al. (Nature, 2011).

MSIG.geneSet

A list containing a set of vectors representing the MSigDB's Canonical Pathways gene set database.

BTM.geneSet

A list containing a set of vectors. Each entry describes one of the blood transcription modules (BTMs) from Li et al (Nat Immunol., 2014)

Usage

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Source

http://www.broadinstitute.org/gsea/msigdb/

References

ISG: Schoggins et al. (Nature, 2011).

MSIG: Liberzon et al. (Bioinformatics, 2011)

BTM: Li et al. (Nat Immunol., 2014).


qusage documentation built on May 31, 2017, 11:25 a.m.