API for rGADEM
de novo motif discovery
| Global functions | |
|---|---|
| .onLoad | Source code |
| GADEM | Man page |
| [,gadem,ANY,ANY,ANY-method | Man page |
| [,gadem,ANY,ANY-method | Man page |
| [,gadem-method | Man page |
| [[,gadem,ANY,ANY-method | Man page |
| [[,gadem-method | Man page |
| align | Man page |
| align-class | Man page |
| consensus | Man page |
| consensus,gadem-method | Man page |
| dim,gadem-method | Man page |
| endPos | Man page |
| endPos,gadem-method | Man page |
| gadem | Man page |
| gadem-class | Man page |
| getPWM | Man page |
| getPWM,gadem-method | Man page |
| getPWM,motif-method | Man page |
| length,gadem-method | Man page |
| motif | Man page |
| motif-class | Man page |
| nMotifs | Man page |
| nMotifs,gadem-method | Man page |
| nOccurrences | Man page |
| nOccurrences,gadem-method | Man page |
| names,gadem-method | Man page |
| names<-,gadem-method | Man page |
| parameters | Man page |
| parameters,gadem-method | Man page |
| parameters-class | Man page |
| plot,gadem,ANY-method | Man page |
| plot,gadem-method | Man page |
| plot,motif,ANY-method | Man page |
| readPWMfile | Man page Source code |
| readTransfacFile | Source code |
| startPos | Man page |
| startPos,gadem-method | Man page |
| summary,list-method | Man page |
