gadem-class: Class "gadem"
In rGADEM: de novo motif discovery

This object contains all gadem output information.

Objects can be created by calls of the form new("gadem", ...).

[: signature(x = "gadem"): subset gadem object.
[[: signature(x = "gadem"): subset gadem object.
nMotifs: signature(x = "gadem"): Number of motifs identified
names: signature(x = "gadem"): Assign motifs names.
dim: signature(x = "gadem"): Number of sequences identified for each motifs.
consensus: signature(x = "gadem"):Sequence of consensus motifs.
nOccurrences: signature(x = "gadem"):View of PWMs.
plot, gadem-method: signature(x = "gadem"):Plot.
startPos: signature(x = "gadem"):Start position for each sequences.
endPos: signature(x = "gadem"):End position for each sequences.
getPWM: signature(x = "gadem"):End position for each sequences.