Files in rGADEM

de novo motif discovery

configure.ac

configure

install-sh

NAMESPACE

DESCRIPTION

configure.win

build/vignette.rds

src/sort.c

src/check_convergence.c

src/consensus.c

src/background.c

src/selection.c

src/evalue_meme.h

src/align_sites.c

src/read_pwm0.c

src/copy_pwm.c

src/sample_wo_replacement.c

src/pwm_score_distr.c

src/read_seq.c

src/gadem.h

src/reverse_seq.c

src/effect_seq_len.c

src/Makevars.in

src/top_kmers.c

src/scan_sites.c

src/random.h

src/normalization.c

src/alloc.c

src/weights.c

src/Makevars

src/transform_pwm.c

src/read_matrix.c

src/score_subsequence.c

src/construct_pwm.c

src/crossover.c

src/mutation.c

src/base_frequency.c

src/config.h.in

src/Gadem_Analysis.c

src/Makevars.win.in

src/output.c

src/config.h

src/extend_alignment.c

src/mask_sites.c

src/initial_population.c

src/evalue_meme.c

src/check_pwm_dist.c

src/alloc.h

src/defines.h

R/readTransfacFile.R R/readPWMfile.R R/GADEM.R R/AllMethods.R R/zzz.R R/AllClasses.R R/readGademPWMFile.R

vignettes/rGADEM.Rnw

man/motif-class.Rd man/parameters-class.Rd man/GADEM.Rd man/readPWMfile.Rd man/gadem-class.Rd man/align-class.Rd

inst/doc/rGADEM.Rnw

inst/doc/rGADEM.pdf inst/doc/rGADEM.R

inst/extdata/jaspar2009.txt

inst/extdata/Test_100.bed

inst/extdata/Test_100.fasta

rGADEM documentation built on Nov. 8, 2020, 8:01 p.m.