rSFFreader: rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.

AuthorMatt Settles <mattsettles@gmail.com>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho
Date of publicationNone
MaintainerMatt Settles <mattsettles@gmail.com>
LicenseArtistic-2.0
Version0.22.0

View on Bioconductor

Files in this package

rSFFreader/.BBSoptions
rSFFreader/DESCRIPTION
rSFFreader/NAMESPACE
rSFFreader/NEWS
rSFFreader/R
rSFFreader/R/allClasses.R rSFFreader/R/allGenerics.R rSFFreader/R/methods-Misc.R rSFFreader/R/methods-SffHeader.R rSFFreader/R/methods-SffReads.R rSFFreader/R/methods-SffReadsQ.R rSFFreader/R/readSFF.R
rSFFreader/README.md
rSFFreader/build
rSFFreader/build/vignette.rds
rSFFreader/inst
rSFFreader/inst/doc
rSFFreader/inst/doc/rSFFreader.R
rSFFreader/inst/doc/rSFFreader.Rnw
rSFFreader/inst/doc/rSFFreader.pdf
rSFFreader/inst/extdata
rSFFreader/inst/extdata/Small454Test.sff
rSFFreader/inst/extdata/SmallTorrentTest.sff
rSFFreader/man
rSFFreader/man/SffHeader-class.Rd rSFFreader/man/SffReads-class.Rd rSFFreader/man/SffReadsQ-class.Rd rSFFreader/man/availableClipModes.Rd rSFFreader/man/load454SampleData.Rd rSFFreader/man/loadIonSampleData.Rd rSFFreader/man/rSFFreader-internals.Rd rSFFreader/man/rSFFreader-package.Rd rSFFreader/man/readsff.Rd rSFFreader/man/readsffgeometry.Rd rSFFreader/man/readsffheader.Rd
rSFFreader/src
rSFFreader/src/Biostrings_stubs.c
rSFFreader/src/IRanges_stubs.c
rSFFreader/src/Makevars.win
rSFFreader/src/R_init_rSFFreader.c
rSFFreader/src/S4Vectors_stubs.c
rSFFreader/src/SFF-io.c
rSFFreader/src/XVector_stubs.c
rSFFreader/src/rSFFreader.h
rSFFreader/vignettes
rSFFreader/vignettes/rSFFreader.Rnw

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