readsffgeometry: Read in basic statistics about an sff file
In rSFFreader: rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers
Description
Usage
Arguments
Value
Author(s)
Examples
Description
readSffGeometry processes a sff file or set of sff files, counting the number of reads and the length of each read.
Usage
1
readSffGeometry(filenames)
Arguments
filenames
File or files to be read in.
Value
A list with two elements, nReads and Read_Widths
Author(s)
Matt Settles <msettles@uidaho.edu>
Examples
1
2
3
sffgeom <- readSffGeometry(system.file("extdata","Small454Test.sff",package="rSFFreader"))
sffgeom$nReads
sffgeom$Read_Widths
rSFFreader documentation built on May 6, 2019, 2:02 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
readSffGeometry processes a sff file or set of sff files, counting the number of reads and the length of each read.
Usage
1 | readSffGeometry(filenames)
|
Arguments
filenames |
File or files to be read in. |
Value
A list with two elements, nReads and Read_Widths
Author(s)
Matt Settles <msettles@uidaho.edu>
Examples
1 2 3 | sffgeom <- readSffGeometry(system.file("extdata","Small454Test.sff",package="rSFFreader"))
sffgeom$nReads
sffgeom$Read_Widths
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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