Description Usage Arguments Details Value See Also Examples
View source: R/project_homes.R
This function finds the home for a given project (study) of interest based
on the organism
and the home_type
.
1 2 3 4 | project_homes(
organism = c("human", "mouse"),
recount3_url = getOption("recount3_url", "http://duffel.rail.bio/recount3")
)
|
organism |
A |
recount3_url |
A |
By default it reads a small text file from
recount3_url
/organism
/homes_index using readLines()
. This text file
should contain each possible project home per line. See
http://duffel.rail.bio/recount3/human/homes_index for an example.
A character()
vector with the available project_home
options.
Other internal functions for accessing the recount3 data:
annotation_ext()
,
create_rse_manual()
,
file_retrieve()
,
locate_url_ann()
,
locate_url()
,
read_counts()
,
read_metadata()
1 2 3 4 5 6 7 8 9 | ## List the different available `project_home` options for the default
## arguments
project_homes("human")
project_homes("mouse")
## Test files
project_homes("human",
recount3_url = "http://snaptron.cs.jhu.edu/data/temp/recount3"
)
|
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