L1-regularization based methods for detection of differential splicing

createDesignMatrix | Create design matrix. |

filterLowCounts | Filter low-count exons. |

filterZeros | Filter zero-count exons. |

fitRegMultiple | Fit models. |

initializeResults | Initialize RegspliceResults object. |

LRTests | Calculate likelihood ratio tests. |

regsplice | Wrapper function to run regsplice. |

RegspliceData | RegspliceData objects. |

RegspliceResults | RegspliceResults objects. |

runNormalization | Calculate normalization factors. |

runVoom | Calculate 'voom' transformation and weights. |

summaryTable | Summary table. |

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