Description Usage Arguments Details Value Fields Accessor functions See Also Examples
View source: R/class_RegspliceResults.R
RegspliceResults
objects contain the results of a regsplice
analysis.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26  RegspliceResults(gene_IDs)
gene_IDs(x)
## S4 method for signature 'RegspliceResults'
gene_IDs(x)
p_vals(x)
## S4 method for signature 'RegspliceResults'
p_vals(x)
p_adj(x)
## S4 method for signature 'RegspliceResults'
p_adj(x)
LR_stats(x)
## S4 method for signature 'RegspliceResults'
LR_stats(x)
df_tests(x)
## S4 method for signature 'RegspliceResults'
df_tests(x)

gene_IDs 
Gene identifiers or names (character vector). 
x 

RegspliceResults
objects are created with the constructor function
RegspliceResults()
, which requires the gene IDs as an argument.
Once created, RegspliceResults
objects are then populated using the functions
fitRegMultiple
, fitNullMultiple
,
fitFullMultiple
, and LRTests
.
The function summaryTable
can be used to display a summary table of the
results.
Returns an empty RegspliceResults
object.
gene_IDs
Gene identifiers or names (character vector).
fit_reg_dev
Deviance of fitted regularized (lasso) models from
fitRegMultiple
.
fit_reg_df
Degrees of freedom of fitted regularized (lasso) models from
fitRegMultiple
.
fit_null_dev
Deviance of fitted null models from
fitNullMultiple
.
fit_null_df
Degrees of freedom of fitted null models from
fitNullMultiple
.
fit_full_dev
Deviance of fitted full models from
fitFullMultiple
.
fit_full_df
Degrees of freedom of fitted full models from
fitFullMultiple
.
p_vals
Raw pvalues (numeric vector).
p_adj
Multiple testing adjusted pvalues (BenjaminiHochberg false discovery rates, FDR).
LR_stats
Likelihood ratio test statistics.
df_tests
Degrees of freedom of likelihood ratio tests.
gene_IDs()
: Accesses gene identifiers or names.
p_vals()
: Accesses raw pvalues.
p_adj()
: Accesses multiple testing adjusted pvalues (BenjaminiHochberg false discovery rates, FDR).
LR_stats()
: Accesses likelihood ratio test statistics.
df_tests()
: Accesses degrees of freedom of likelihood ratio tests.
fitRegMultiple
fitNullMultiple
fitFullMultiple
LRTests
summaryTable
1 2 3  # initialize RegspliceResults object
gene_IDs < paste0("gene", 1:5)
RegspliceResults(gene_IDs)

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