Files in regutools

regutools: an R package for data extraction from RegulonDB

NEWS.md

NAMESPACE

DESCRIPTION

README.md tests/testthat.R tests/testthat/test_network_functions.R tests/testthat/test-existing_partial_match.R tests/testthat/test-existing_intervals.R tests/testthat/test-get_dataset.R tests/testthat/test_convert_granges.R tests/testthat/test-non_existing_intervals.R tests/testthat/test-get_binding_sites.R tests/testthat/test-list_attributes.R tests/testthat/test-get_gene_synonyms.R tests/testthat/test-guess_id.R tests/testthat/test-list_datasets.R tests/testthat/test-get_gene_regulators.R tests/testthat/test-build_condition.R tests/testthat/test-get_dna_objects.R tests/testthat/test-plot_dna_objects.R R/get_dna_objects.R R/get_dataset.R R/regulondb-classes.R R/get_regulatory_network.R R/plot_dna_objects.R R/get_gene_regulators.R R/existing_partial_match.R R/regulondb-methods.R R/get_gene_synonyms.R R/list_attributes.R R/guess_id.R R/non_existing_intervals.R R/regutools-package.R R/get_binding_sites.R R/build_condition.R R/existing_intervals.R R/list_datasets.R R/connect_database.R R/get_summary.R man/build_condition.Rd man/get_dataset.Rd man/connect_database.Rd man/regulondb-methods.Rd man/list_attributes.Rd man/regulondb.Rd man/convert_to_granges.Rd man/convert_to_biostrings.Rd man/non_existing_intervals.Rd man/get_binding_sites.Rd man/existing_partial_match.Rd man/get_regulatory_summary.Rd man/regulondb-class.Rd man/get_regulatory_network.Rd man/guess_id.Rd man/get_dna_objects.Rd man/existing_intervals.Rd man/list_datasets.Rd man/get_gene_synonyms.Rd man/regulondb_result-class.Rd man/regutools-package.Rd man/plot_dna_objects.Rd man/get_gene_regulators.Rd

man/figures/logo.png

inst/CITATION

inst/extdata/metadata_regutools.csv

inst/doc/regutools.Rmd

inst/doc/regutools.html

inst/doc/regutools.R inst/scripts/make-metadata_regulondb_sqlite.R inst/scripts/make-data_regulondb_sqlite.R

build/vignette.rds

vignettes/regutools.Rmd

regutools documentation built on Dec. 20, 2020, 2 a.m.