Man pages for regutools
regutools: an R package for data extraction from RegulonDB

build_conditionConstruct logical condition to query database
connect_databaseConnect to the regulondb database
convert_to_biostringsFunction to convert output of regulondb queries to Biostrings...
convert_to_grangesFunction to convert output of regulondb queries to...
existing_intervalsConstructs a particular logical condition to query database
existing_partial_matchConstructs a logical condition to query database
get_binding_sitesGet the binding sites for a Transcription Factor (TF)
get_datasetExtract data from RegulonDB
get_dna_objectsRetrieve genomic elements from regulonDB
get_gene_regulatorsGet TFs or genes that regulate the genes of interest
get_gene_synonymsRetrieve gene synonyms
get_regulatory_networkReturn complete regulatory network.
get_regulatory_summaryReturn summary of gene regulation.
guess_idGuess gene id type
list_attributesList attributes/fields from a dataset/table
list_datasetsList available datasets in RegulonDB database
non_existing_intervalsConstructs a logical condition to query database
plot_dna_objectsPlot annotation elements within genomic region
regulondbConstructor function of a regulondb class
regulondb-classThe regulondb class
regulondb-methodsMethods for regulondb objects
regulondb_result-classThe regulondb_results class
regutools-packageregutools: regutools: an R package for data extraction from...
regutools documentation built on May 2, 2020, 2:01 a.m.