regulondb: Constructor function of a regulondb class

In regutools: regutools: an R package for data extraction from RegulonDB

Description

The build_regulondb function is a constructor function of a regulondb class.

Usage

regulondb(database_conn, organism, genome_version, database_version)

Arguments

database_conn	A SQLiteConnection-class connection to the RegulonDB database made with connect_database().
organism	A character vector with the name of the organism of the database.
genome_version	A character vector with the version of the genome build.
database_version	A character vector with the version of regulondb build.

Value

A regulondb object.

Examples

## Connect to the RegulonDB database if necessary
if (!exists("regulondb_conn")) regulondb_conn <- connect_database()

## Build a regulondb object
e_coli_regulondb <-
    regulondb(
        database_conn = regulondb_conn,
        organism = "E.coli",
        database_version = "1",
        genome_version = "1"
    )

regutools documentation built on Dec. 20, 2020, 2 a.m.