Man pages for regutools
regutools: an R package for data extraction from RegulonDB
| build_condition | Construct logical condition to query database |
| connect_database | Connect to the regulondb database |
| convert_to_biostrings | Function to convert output of regulondb queries to Biostrings... |
| convert_to_granges | Function to convert output of regulondb queries to... |
| existing_intervals | Constructs a particular logical condition to query database |
| existing_partial_match | Constructs a logical condition to query database |
| get_binding_sites | Get the binding sites for a Transcription Factor (TF) |
| get_dataset | Extract data from RegulonDB |
| get_dna_objects | Retrieve genomic elements from regulonDB |
| get_gene_regulators | Get TFs or genes that regulate the genes of interest |
| get_gene_synonyms | Retrieve gene synonyms |
| get_regulatory_network | Return complete regulatory network. |
| get_regulatory_summary | Return summary of gene regulation. |
| guess_id | Guess gene id type |
| list_attributes | List attributes/fields from a dataset/table |
| list_datasets | List available datasets in RegulonDB database |
| non_existing_intervals | Constructs a logical condition to query database |
| plot_dna_objects | Plot annotation elements within genomic region |
| regulondb | Constructor function of a regulondb class |
| regulondb-class | The regulondb class |
| regulondb-methods | Methods for regulondb objects |
| regulondb_result-class | The regulondb_results class |
| regutools-package | regutools: regutools: an R package for data extraction from... |
