assay-BQSummarizedExperiment-missing-method: extract assay data
In restfulSE: Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
Description
Usage
Arguments
Value
Note
Description
extract assay data
Usage
1
2
Arguments
x
BQSummarizedExperiment instance
i
index for retrieval, ignored at present
...
not used
Value
matrix
Note
Very experimental approach to retrieving numerical data given
a SummarizedExperiment 'shell'. We need more checking of
consistency between assay and clinical data before creating the
shell. We use dcast to transform query result to a matrix, and
some 'individuals' may have multiple contributions ... we use
fun.aggregate = max and will see warnings until this is cleared up.
restfulSE documentation built on Nov. 8, 2020, 8:01 p.m.
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Description Usage Arguments Value Note
Description
extract assay data
Usage
1 2 |
Arguments
x |
BQSummarizedExperiment instance |
i |
index for retrieval, ignored at present |
... |
not used |
Value
matrix
Note
Very experimental approach to retrieving numerical data given
a SummarizedExperiment 'shell'. We need more checking of
consistency between assay and clinical data before creating the
shell. We use dcast to transform query result to a matrix, and
some 'individuals' may have multiple contributions ... we use
fun.aggregate = max and will see warnings until this is cleared up.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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