goPatt: Create a data.frame with ENSEMBL and SYMBOL identifiers...

Description Usage Arguments Value Examples

View source: R/demos.R

Description

Create a data.frame with ENSEMBL and SYMBOL identifiers associated with a GO TERM specified by a regular expression in termPattern

Usage

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goPatt(termPattern = "neurotro", targets = c("ENSEMBL", "SYMBOL"),
  organism = "Hs", inst = "eg")

Arguments

termPattern

a character string encoding a regular expression to be matched to keys of type TERM in GO.db

targets

columns to be returned from org.[organism].[inst].db

organism

two-letter code for organism in the OrgDb family of packages

inst

two- or three-letter code (e.g., eg for ENTREZ GENE or sgd for yeastgenome.org) identifying institute responsible for annotation

Value

data.frame

Examples

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gp = goPatt()
dim(gp)
head(gp)

restfulSE documentation built on Nov. 1, 2018, 3:02 a.m.