rfPred: Assign rfPred functional prediction scores to a missense variants list

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to be connected on the Internet or to download the TabixFile and index (approximately 3.3 Go).

Package details

AuthorFabienne Jabot-Hanin, Hugo Varet and Jean-Philippe Jais
Bioconductor views Annotation Classification Software
MaintainerHugo Varet <varethugo@gmail.com>
LicenseGPL (>=2 )
URL http://www.sbim.fr/rfPred
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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rfPred documentation built on Nov. 8, 2020, 11:11 p.m.