rfPred_scores_motor: Motor of 'rfPred_scores'

Description Usage Arguments Value Note

View source: R/rfPred_scores_motor.r

Description

Motor of rfPred_scores

Usage

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  rfPred_scores_motor(variant_list, data, index, all.col,
    file.export, n.cores)

Arguments

variant_list

Variants list in a data.frame containing 4 or 5 columns: chromosome number, hg19 genomic position on the chromosome, reference nucleotid, variant nucleotid and uniprot protein identifier (optional)

data

Path to the compressed TabixFile, either on the server (default) or on the user's computer

index

Path to the index of the TabixFile, either on the server (default) or on the user's computer

all.col

TRUE to return all available information, FALSE to return a more compact result (the most informative columns, see Value)

file.export

Optional, name of the CSV file in which export the results (default is NULL)

n.cores

number of cores to use when scaning the TabixFile, can be efficient for large request (default is 1)

Value

see the rfPred_scores function

Note

This function is called by the rfPred_scores S4 method


rfPred documentation built on Nov. 8, 2020, 11:11 p.m.