rfPred_scores_motor: Motor of 'rfPred_scores'

In rfPred: Assign rfPred functional prediction scores to a missense variants list

Description

Motor of rfPred_scores

Usage

  rfPred_scores_motor(variant_list, data, index, all.col,
    file.export, n.cores)

Arguments

variant_list	Variants list in a data.frame containing 4 or 5 columns: chromosome number, hg19 genomic position on the chromosome, reference nucleotid, variant nucleotid and uniprot protein identifier (optional)
data	Path to the compressed TabixFile, either on the server (default) or on the user's computer
index	Path to the index of the TabixFile, either on the server (default) or on the user's computer
all.col	TRUE to return all available information, FALSE to return a more compact result (the most informative columns, see Value)
file.export	Optional, name of the CSV file in which export the results (default is NULL)
n.cores	number of cores to use when scaning the TabixFile, can be efficient for large request (default is 1)

Value

see the rfPred_scores function

Note

This function is called by the rfPred_scores S4 method

rfPred documentation built on Nov. 8, 2020, 11:11 p.m.